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The Image Data Resource (IDR) is an online, public data repository which seeks to store, integrate and serve image datasets from published scientific studies. We have collected and are continuing to receive existing and newly created “reference image" datasets that are valuable resources for a broad community of users, either because they will be frequently accessed and cited or because they can serve as a basis for re-analysis and the development of new computational tools.


Take a look at the data

Current Status


Currently, the IDR (version 0.10.0, released on 2021-09-01) contains 283 TB of multi-dimensional images consisting of 12 M multi-dimensional images or 98 M individual 2D planes. IDR contains over 1 M different experiments. Data comes from 95 studies on human, Drosophila, budding and fission yeast, and mouse cells and tissue. Imaging modalities represented so far include high content screens, time-lapse imaging, whole slide histopathology, and super-resolution microscopy. The resource receives over 2500 unique visits per week.


Studies


Study 5D Images 2D Planes Size (TB) Average dimensions (XYZCT)
idr0001-graml-sysgro/screenA 109728 3511296 10.06 1376 x 1040 x 16 x 2 x 1
idr0002-heriche-condensation/screenA 1152 773760 2.1 1344 x 1024 x 1 x 2 x 330
idr0003-breker-plasticity/screenA 97920 293760 0.2 672 x 512 x 1 x 3 x 1
idr0004-thorpe-rad52/screenA 3765 75308 0.17 672 x 510 x 10 x 2 x 1
idr0005-toret-adhesion/screenB 5184 5184 0.02 1392 x 1040 x 1 x 1 x 1
idr0005-toret-adhesion/screenA 40608 40608 0.12 1392 x 1040 x 1 x 1 x 1
idr0006-fong-nuclearbodies/screenA 240848 481696 1.4 1392 x 1040 x 1 x 2 x 1
idr0007-srikumar-sumo/screenA 3456 6912 0.02 1346 x 1003 x 1 x 2 x 1
idr0008-rohn-actinome/screenA 44538 138990 0.09 640 x 512 x 1 x 3 x 1
idr0008-rohn-actinome/screenB 11406 38760 0.03 696 x 520 x 1 x 3 x 1
idr0009-simpson-secretion/screenA 370176 1112064 3.04 1344 x 1024 x 1 x 3 x 1
idr0009-simpson-secretion/screenB 26880 80640 0.21 1344 x 1024 x 1 x 3 x 1
idr0010-doil-dnadamage/screenA 56832 113664 0.08 696 x 520 x 1 x 2 x 1
idr0011-ledesmafernandez-dad4/screenA 6175 389025 0.27 672 x 512 x 21 x 3 x 1
idr0011-ledesmafernandez-dad4/screenC 86 5367 0.0 672 x 512 x 21 x 3 x 1
idr0011-ledesmafernandez-dad4/screenB 1806 113628 0.08 672 x 512 x 21 x 3 x 1
idr0012-fuchs-cellmorph/screenA 45692 137076 0.38 1344 x 1024 x 1.13 x 2.9 x 1
idr0013-neumann-mitocheck/screenA 191368 17851318 13.9 1344 x 1024 x 1 x 1 x 93
idr0013-neumann-mitocheck/screenB 9627 904248 0.64 1344 x 1024 x 1 x 1 x 94
idr0015-colin-taraoceans/screenA 32776 3319125 2.49 2048 x 2048 x 20 x 5 x 1
idr0016-wawer-bioactivecompoundprofiling/screenA 934332 4671660 3.19 696 x 520 x 1 x 5 x 1
idr0017-breinig-drugscreen/screenA 147456 294912 2.48 2048 x 2048 x 1 x 2 x 1
idr0018-neff-histopathology/experimentA 899 2237 0.27 40673 x 23249 x 1 x 2 x 1
idr0019-sero-nfkappab/screenA 25872 77616 0.03 668 x 501 x 1 x 3 x 1
idr0020-barr-chtog/screenA 36960 147840 0.03 609 x 483 x 1 x 4 x 1
idr0021-lawo-pericentriolarmaterial/experimentA 414 935 0.0 257 x 257 x 1 x 2 x 1
idr0022-koedoot-cellmigration/screenA 1810944 1810944 1.26 672 x 512 x 1 x 1 x 1
idr0022-koedoot-cellmigration/screenB 525312 525312 0.36 672 x 512 x 1 x 1 x 1
idr0023-szymborska-nuclearpore/experimentA 524 106085 0.0 1250 x 1250 x 202 x 1 x 1
idr0025-stadler-proteinatlas/screenA 1152 3456 0.01 2048 x 2048 x 1 x 3 x 1
idr0026-weigelin-immunotherapy/experimentA 227 959148 0.48 501.0 x 497.9 x 103.3 x 3.4 x 56.5
idr0027-dickerson-chromatin/experimentA 229 697100 0.03 122 x 122 x 17 x 2 x 87
idr0028-pascualvargas-rhogtpases/screenC 42700 170800 0.05 667 x 500 x 1 x 4 x 1
idr0028-pascualvargas-rhogtpases/screenB 42644 170576 0.05 667 x 500 x 1 x 4 x 1
idr0028-pascualvargas-rhogtpases/screenA 26880 107520 0.03 667 x 501 x 1 x 4 x 1
idr0030-sero-yap/screenA 92400 369600 0.14 647.2 x 498.0 x 1 x 4 x 1
idr0032-yang-meristem/experimentA 458 1374 0.0 1063 x 1063 x 1 x 3 x 1
idr0033-rohban-pathways/screenA 41472 207360 0.49 1080 x 1080 x 1 x 5 x 1
idr0034-kilpinen-hipsci/screenA 6156 24624 0.11 1360 x 1024 x 1 x 4 x 1
idr0035-caie-drugresponse/screenA 13200 39600 0.1 1280 x 1024 x 1 x 3 x 1
idr0036-gustafsdottir-cellpainting/screenA 69120 345600 0.25 696 x 520 x 1 x 5 x 1
idr0037-vigilante-hipsci/screenA 29727 120312 0.25 1360 x 1024 x 1 x 4 x 1
idr0038-held-kidneylightsheet/experimentC 12 236872 1.71 1920 x 1920 x 329 x 2 x 29.7
idr0038-held-kidneylightsheet/experimentB 10 9275 0.07 1920 x 1920 x 411.7 x 2.2 x 1
idr0038-held-kidneylightsheet/experimentA 74 132590 0.82 1833.2 x 1777.8 x 548.3 x 3.4 x 1
idr0040-aymoz-singlecell/experimentA 780 86116 0.73 2048 x 2048 x 1 x 5 x 21.5
idr0041-cai-mitoticatlas/experimentA 60480 3749760 0.5 256 x 256 x 31 x 2 x 1
idr0042-nirschl-wsideeplearning/experimentA 2299 6897 0.0 250 x 250 x 1 x 3 x 1
idr0043-uhlen-humanproteinatlas/experimentA 4916266 14748798 132.34 2998 x 2998 x 1 x 3 x 1
idr0044-mcdole-tardislightsheet/experimentA 16 1818463 0.64 2128 x 1476 x 219 x 1 x 359
idr0045-reichmann-zygotespindle/experimentA 373 2163099 1.35 487 x 487 x 71 x 2.5 x 40
idr0047-neuert-yeastmRNA/experimentA 1011 78668 0.66 2048 x 2048 x 17.1 x 5.3 x 1
idr0048-abdeladim-chroms/experimentA 2 4479 0.13 11034 x 9271 x 747 x 3 x 1
idr0050-springer-cytoskeletalsystems/experimentA 4816 31328 0.16 1756 x 1756 x 2 x 1 x 3
idr0051-fulton-tailbudlightsheet/experimentA 5 243029 0.02 429 x 463 x 357 x 1 x 122
idr0052-walther-condensinmap/experimentC 171 8720 0.0 169.3 x 177.0 x 25.5 x 2 x 1
idr0052-walther-condensinmap/experimentA 282 699360 0.14 256 x 256 x 31 x 2 x 40
idr0052-walther-condensinmap/experimentB 68 65988 0.0 128 x 128 x 9 x 3 x 35.9
idr0053-faas-virtualnanoscopy/experimentA 5 11 0.53 225078.4 x 113347.2 x 1 x 2.2 x 1
idr0054-segura-tonsilhyperion/experimentA 3 81 0.0 2500 x 2500 x 1 x 27 x 1
idr0056-stojic-lncrnas/screenB 115110 460440 0.3 660 x 494 x 1 x 4 x 1
idr0056-stojic-lncrnas/screenA 92400 369600 0.25 660 x 501 x 1 x 4 x 1
idr0056-stojic-lncrnas/screenC 13440 53760 0.04 667 x 499 x 1 x 4 x 1
idr0061-wolf-spindlepositioning/screenA 5952 1071360 8.44 2048 x 2048 x 1 x 1 x 180
idr0062-blin-nuclearsegmentation/experimentA 22 8222 0.02 618.0 x 548.0 x 168.0 x 3 x 1
idr0063-newman-chromosomalloci/experimentA 146 281466 0.15 512 x 512 x 82 x 1 x 47
idr0064-goglia-erkdynamics/screenA 450 108900 0.06 512 x 512 x 1 x 2 x 121
idr0065-camsund-crispri/experimentB 12870 64350 0.23 2048 x 879 x 1 x 5 x 1
idr0065-camsund-crispri/experimentA 1170 1125540 3.1 2048 x 879 x 1 x 2 x 481
idr0066-voigt-mesospim/experimentA 6 8222 0.03 2048 x 1668 x 646 x 1 x 1
idr0066-voigt-mesospim/experimentD 2 2978 0.04 5025 x 6735 x 1489 x 1 x 1
idr0066-voigt-mesospim/experimentC 4 3739 0.04 2044 x 2130 x 1084 x 1 x 1
idr0066-voigt-mesospim/experimentB 5 3878 0.03 5493 x 2188 x 748 x 1 x 1
idr0067-king-yeastmeiosis/experimentA 419 136360 0.29 1224 x 1224 x 8 x 2 x 36
idr0069-caldera-perturbome/screenA 190464 571392 1.23 1360 x 1024 x 1 x 3 x 1
idr0070-kerwin-hdbr/experimentA 4554 13512 0.13 8223 x 9270 x 1 x 3 x 1
idr0071-feldman-crisprko/experimentA 47970 450918 0.95 1024 x 1024 x 2 x 4 x 1
idr0071-feldman-crisprko/experimentC 47970 450918 0.98 1024 x 1024 x 2 x 4 x 1
idr0071-feldman-crisprko/experimentD 47970 450918 0.99 1024 x 1024 x 2 x 4 x 1
idr0071-feldman-crisprko/experimentE 5488 62426 0.13 1024 x 1024 x 2 x 5 x 1
idr0071-feldman-crisprko/experimentF 21320 196144 1.66 2048 x 2048 x 2 x 4 x 1
idr0071-feldman-crisprko/experimentB 47955 450777 0.98 1024 x 1024 x 2 x 4 x 1
idr0072-schormann-subcellref/screenA 17385 34770 0.09 1347 x 1001 x 1 x 2 x 1
idr0072-schormann-subcellref/screenB 114091 232569 0.44 1059 x 799 x 1 x 2 x 1
idr0073-schaadt-immuneinfiltrates/experimentA 193 579 0.02 7905 x 6994 x 1 x 3 x 1
idr0075-cabirol-honeybee/experimentA 20 1932 0.0 512 x 512 x 97 x 1 x 1
idr0076-ali-metabric/experimentA 548 27400 0.02 478 x 463 x 1 x 50 x 1
idr0077-valuchova-flowerlightsheet/experimentA 149 1005278 6.49 1780 x 1780 x 99 x 4 x 32
idr0078-mattiazziusaj-endocyticcomp/screenB 43008 430080 0.85 1080 x 1080 x 5 x 2 x 1
idr0078-mattiazziusaj-endocyticcomp/screenA 111597 1530300 3.95 1315 x 983 x 5 x 3 x 1
idr0079-hartmann-lateralline/experimentA 350 69499 0.12 1623 x 809 x 141 x 1 x 1
idr0079-hartmann-lateralline/experimentB 62 10917 0.02 1572 x 780 x 117 x 2 x 1
idr0080-way-perturbation/screenA 62208 311040 3.06 2160 x 2160 x 1 x 5 x 1
idr0081-georgi-adenovirus/screenE 6144 12288 0.1 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus/screenC 768 1536 0.01 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus/screenB 768 1536 0.01 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus/screenD 6144 12288 0.1 2048 x 2048 x 1 x 2 x 1
idr0081-georgi-adenovirus/screenA 768 1536 0.01 2048 x 2048 x 1 x 2 x 1
idr0082-pennycuick-lesions/experimentA 336 784 0.01 10842 x 10956 x 1 x 2 x 1
idr0083-lamers-sarscov2/experimentA 2 2 0.07 111872 x 130304 x 1 x 1 x 1
idr0084-oudelaar-alphaglobin/experimentA 493 55258 0.12 1024 x 1024 x 56 x 2 x 1
idr0085-walsh-mfhrem/experimentA 7 15206 0.12 2076 x 1681 x 1160 x 2 x 1
idr0086-miron-micrographs/experimentB 943 138555 0.07 512 x 512 x 49 x 3 x 1
idr0086-miron-micrographs/experimentD 11 10546 0.0 1018 x 602 x 503 x 2 x 1
idr0086-miron-micrographs/experimentA 574 55454 0.03 512 x 512 x 45 x 2 x 1
idr0086-miron-micrographs/experimentC 92 14484 0.01 512 x 512 x 52 x 3 x 1
idr0087-paci-nuclearimport/experimentA 456 50976 0.05 640 x 640 x 1 x 3 x 37
idr0088-cox-phenomicprofiling/screenA 739991 2219973 5.92 1250 x 1050 x 1 x 3 x 1
idr0089-fischl-coldtemp/experimentA 373 80505 0.17 1024 x 1024 x 72 x 3 x 1
idr0089-fischl-coldtemp/experimentB 882 64560 0.03 480 x 480 x 33 x 2 x 1
idr0090-ashdown-malaria/screenA 17408 2698240 22.6 2048 x 2044 x 31 x 5 x 1
idr0091-julou-lacinduction/experimentA 1816 1451373 1.46 460 x 979 x 1 x 2 x 274
idr0092-ostrop-organoid/screenA 176 66000 0.21 2080 x 1552 x 25 x 3 x 5
idr0093-mueller-perturbation/screenA 233505 934020 10.33 2560 x 2160 x 1 x 4 x 1
idr0094-ellinger-sarscov2/screenB 88128 88128 0.21 1080 x 1080 x 1 x 1 x 1
idr0094-ellinger-sarscov2/screenA 55680 55680 0.13 1080 x 1080 x 1 x 1 x 1
idr0095-ali-asymmetry/experimentB 576 1728 0.01 2048 x 2048 x 1 x 3 x 1
idr0095-ali-asymmetry/experimentA 384 1152 0.01 2048 x 2048 x 1 x 3 x 1
idr0095-ali-asymmetry/experimentC 2261 6783 0.06 2048 x 2048 x 1 x 3 x 1
idr0097-reicher-proteintag/experimentB 18 153 0.01 5834 x 5834 x 1 x 8 x 2
idr0097-reicher-proteintag/experimentC 33 81 0.05 17720 x 17720 x 1 x 2 x 1
idr0097-reicher-proteintag/screenA 3600 3600 0.01 1080 x 1080 x 1 x 1 x 1
idr0098-huang-octmos/experimentB 18 42 0.01 78373 x 27356 x 1 x 2 x 1
idr0098-huang-octmos/experimentA 6800 3173956 2.82 616 x 343 x 467 x 1 x 1
idr0099-jain-beetlelightsheet/experimentA 5 2292429 9.03 1057 x 1797 x 1045 x 1 x 444
idr0100-capar-myelin/experimentA 5 588 0.02 8607 x 2253 x 39 x 3 x 1
idr0103-coomer-hiv1fusion/experimentA 18 36 0.0 8000 x 7887 x 1 x 2 x 1
idr0106-kubota-lunglightsheet/experimentA 1 1203 0.04 4992 x 4255 x 401 x 3 x 1
idr0107-morgan-hei10/experimentA 1962 196950 0.11 625 x 625 x 77 x 1 x 1
idr0108-sabinina-nuclearporecomplex/experimentA 95 3584791 1.19 1820 x 1879 x 1 x 1 x 37735
idr0109-zaritsky-melanoma/experimentA 874 530834 5.88 2560 x 2160 x 1 x 1 x 607
idr0110-rodermund-xistrna/experimentA 5684 6376605 1.0 384 x 384 x 374 x 3 x 1
idr0111-lee-cellmigration/experimentA 396 50732 0.19 6202 x 6882 x 1 x 1 x 128
idr0111-lee-cellmigration/experimentB 24 48 0.01 11429 x 12453 x 1 x 2 x 1
idr0112-verszat-motorneurons/screenA 15855 268064 0.63 1080 x 1080 x 5 x 4 x 1
idr0113-bottes-opcclones/experimentA 110 20786 0.01 512 x 512 x 17 x 1 x 11
idr0117-croce-marimba/experimentA 20 60 3 750 x 748 x 1 x 3 x 1
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IDR logo version: devel. Last updated: 2021-09-01.