idr0138
Release Date: 2024-09-10
Publication DOI: 10.1038/s41587-021-01006-2
Data DOI: 10.17867/10000198
License: CC BY 4.0
PubMed ID: 34489600
PMC ID: PMC8763645
External URL: https://marionilab.cruk.cam.ac.uk/SpatialMouseAtlas
Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis
seqFISH study of sagittal sections of mouse embryos at 8-10 somite stage. An additional round of hybridisation to capture cell membrane is performed to accurately segment cell boundaries.
Lohoff T, Ghazanfar S, Missarova A, Koulena N, Pierson N, Griffiths JA, Bardot ES, Eng CHL, Tyser RCV, Argelaguet R, Guibentif C, Srinivas S, Briscoe J, Simons BD, Hadjantonakis AK, Göttgens B, Reik W, Nichols J, Cai L, Marioni JC
Browse Data in IDR
idr0138-lohoff-seqfish/experimentA ()
BioFile Finder
BioFile Finder is a tool for filtering, sorting and grouping tabular data. Each table below is loaded from IDR as a Parquet file, with each row representing an image. Images can be selected in BioFile Finder and the "Download" link will open them in the IDR viewer.
experimentA ( , parquet: )
Download
To download original image files in your browser, you can access original data.
Download as JSON.
For more download options, including bulk download using Globus or FTP clients, see the IDR Data download page.
Sample Type: tissue
Organism: Mus musculus
Study Type: seqFISH
Imaging Method: spinning disk confocal microscopy
Copyright: Lohoff et al
Data Publisher: University of Dundee
Annotation File: idr0138-experimentA-annotation.csv
