IDR uses OME’s Bio-Formats and OMERO tools to read, manage and serve data, and provide links to EMBL-EBI’s molecular and structural resources. The resource is built upon EMBL-EBI’s OpenStack-based Embassy infrastructure. All tools used for reading and converting metadata associated with each dataset and all scripts used to build the infrastructure are maintained and available. A parallel system that enables computational re-analysis of IDR data will be released soon.
The IDR includes a virtual analysis environment that provides full access to all data. Please contact us for an account.
Details on accessing the public IDR API are available under about/api.html.
Currently, the IDR (version 0.6.2, released on 2019-01-16) contains 77.49 Tb of multi-dimensional image data consisting of 49271173 Mio individual planes. IDR contains over a million different experiments. Data comes from studies on human, Drosophila, budding and fission yeast, and mouse cells and tissue. Imaging modalities represented so far include high content screens, time-lapse imaging, whole slide histopathology, and super-resolution microscopy. See the full list of published studies for more details.
© 2016-2019 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 4.0 International License.
OMERO is distributed under the terms of the GNU GPL. For more information, visit openmicroscopy.org